Samples SRR442165 SRR442166 SRR442167 SRR442168 SRR442169 SRR442170 SRR442171 SRR442172 SRR442173 SRR442174 SRR442175 SRR442176 SRR442177 SRR442178 SRR442179 SRR442180 SRR442181 SRR442182 SRR442183 SRR442184 SRR442185 SRR442186 SRR442187 SRR442188 SRR442189 SRR442190 SRR442191 SRR442192 SRR442193 SRR442194 SRR442195 SRR442196 SRR442197 SRR442198 SRR442199 SRR442200 SRR442201 SRR442202 SRR442203 SRR442204 SRR442205 SRR442206 SRR442207 SRR442208 SRR442209 SRR442210 SRR442211 SRR442212 SRR442213 SRR442214 SRR442215 SRR442216 SRR442217 SRR442218 Acidaminococcus 0 53 0 45 0 0 0 0 3 16 0 0 0 0 0 0 0 90 0 0 0 45 0 0 0 0 0 0 0 0 0 0 19 20 0 0 0 0 0 0 0 4 0 0 17 9 0 0 0 0 38 0 0 2 Akkermansia 0 0 0 3 0 0 0 0 0 0 0 0 0 4 0 0 93 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 Alistipes 32 25 4 321 0 5 35 0 0 0 2 6 3 9 2 0 0 0 0 0 263 0 36 46 0 107 42 0 0 0 0 29 2 0 0 0 13 0 16 15 0 2 20 0 35 22 0 0 0 2 0 2 0 19 Allisonella 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 Alloprevotella 0 0 0 0 0 0 0 25 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79 0 26 0 0 0 0 0 0 0 75 Anaerobacter 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 Bacteroides 1077 1688 2326 2179 2486 409 2861 492 936 2137 1368 1066 1953 1104 1173 1417 1867 2347 14 2281 2092 2410 2029 799 2493 970 1549 2003 2004 2977 2388 2484 1880 1072 1179 2564 837 1765 315 1631 1369 912 790 80 1788 1080 1909 1313 3004 1066 1891 1107 2753 355 Barnesiella 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 11 0 0 9 0 2 0 0 0 0 36 0 0 0 0 0 0 0 0 0 0 2 0 0 13 0 0 0 0 0 0 Bifidobacterium 0 0 0 0 0 4 0 0 4 0 0 0 6 14 0 0 0 0 0 0 0 2 5 0 0 2 0 0 0 0 60 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 2 0 0 0 0 Bilophila 0 0 0 0 0 2 10 11 10 0 2 12 0 4 0 0 8 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 0 0 0 0 0 0 6 2 2 0 6 14 0 2 0 8 2 0 0 0 Blautia 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0 0 2 0 0 0 6 0 0 0 0 0 0 3 0 0 0 3 0 2 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 Butyricicoccus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 Butyricimonas 0 0 0 0 0 3 0 0 2 0 0 0 19 12 2 0 3 2 0 0 6 0 0 0 0 44 0 0 0 0 0 6 6 2 0 0 0 0 6 0 0 4 0 0 0 0 0 0 2 0 4 0 0 2 Catenibacterium 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 Clostridium_IV 2 0 0 2 0 0 0 23 0 0 2 0 2 5 0 0 0 0 0 0 27 0 16 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 12 0 2 0 6 0 2 0 0 0 0 0 2 Clostridium_sensu_stricto 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 71 0 0 0 0 0 0 Clostridium_XI 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 2 0 0 0 0 0 0 Clostridium_XIX 0 0 0 0 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 2 0 287 0 0 63 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 Clostridium_XlVa 0 0 0 2 0 0 4 2 0 0 12 0 0 0 0 0 0 0 0 0 4 0 0 0 9 0 15 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 2 9 0 22 0 0 17 0 0 0 0 0 Clostridium_XlVb 0 0 0 0 0 0 0 0 2 0 0 0 0 0 5 29 0 0 0 4 16 0 2 2 12 0 87 0 0 0 0 0 0 10 0 0 0 2 0 0 0 0 0 6 4 36 0 8 0 0 0 0 0 0 Coprobacillus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Coprococcus 0 0 0 0 0 6 0 0 0 2 0 0 0 0 6 0 0 0 0 0 23 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 32 0 0 0 0 0 0 0 0 0 0 Desulfovibrio 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 Dialister 0 0 0 0 0 0 0 70 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32 0 0 0 0 11 0 0 0 0 0 0 0 0 0 7 Dorea 0 2 0 0 0 0 4 0 2 0 0 2 3 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 2 0 5 6 0 0 6 0 0 0 0 0 0 0 2 0 0 0 0 2 0 2 0 14 0 0 Enterococcus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Erysipelotrichaceae_incertae_sedis 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 13 0 0 Escherichia/Shigella 0 0 367 103 15 0 0 57 0 0 4 4 316 0 0 0 0 120 0 19 29 2 18 16 0 0 0 66 0 0 0 16 32 187 0 9 19 0 0 15 282 16 5 3 0 15 0 509 16 0 0 6 0 2 Faecalibacterium 28 0 0 0 165 14 0 8 2 19 0 0 59 11 451 0 69 0 4 15 175 3 283 77 129 0 114 0 0 0 270 0 0 24 0 0 0 0 26 0 21 22 71 12 11 9 4 13 0 18 18 20 0 9 Fusobacterium 0 4 0 0 0 0 0 0 0 0 0 0 2 0 0 4 0 0 0 4 0 0 0 0 0 0 323 14 0 0 4 0 165 0 0 54 0 0 2 0 0 0 0 0 0 0 25 0 101 0 19 0 0 18 Gemmiger 0 0 0 0 0 0 0 0 17 0 0 0 17 2 0 0 4 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 3 3 0 3 0 0 0 0 0 0 0 0 Haemophilus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Hallella 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Howardella 0 0 64 0 0 0 5 0 26 0 2 0 0 0 0 33 19 0 0 0 7 0 0 0 0 6 8 0 0 0 72 3 0 13 105 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 Klebsiella 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30 0 0 0 0 0 19 0 0 15 0 0 0 0 0 0 Kluyvera 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Kosakonia 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 0 0 0 2 0 0 0 0 0 0 0 0 0 Lachnospiracea_incertae_sedis 0 6 39 127 10 2 61 0 0 22 0 0 2 0 44 65 31 0 0 0 99 20 2 0 5 5 224 27 31 0 3 3 0 0 0 0 0 4 15 3 18 0 0 2 26 0 6 7 0 0 2 3 15 2 Lactonifactor 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Megamonas 0 0 0 0 0 0 28 0 0 0 0 0 0 5 63 0 0 0 0 0 0 0 0 0 115 0 0 0 0 0 0 0 44 0 0 0 9 32 7 98 0 0 0 10 0 0 0 0 0 0 98 209 190 2 Megasphaera 0 22 0 0 2 15 0 0 0 20 55 0 2 0 0 0 0 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 6 2 0 0 0 23 0 3 0 0 0 17 0 26 0 0 0 Mitsuokella 0 0 0 0 0 121 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 0 0 0 48 0 0 0 Moryella 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0 0 0 5 5 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Odoribacter 15 0 0 0 3 4 10 0 12 0 0 5 4 58 0 0 7 0 0 0 8 0 15 9 0 9 0 0 0 0 0 17 2 9 0 0 0 0 0 0 0 0 0 0 0 28 0 5 0 2 3 0 2 0 Oscillibacter 0 0 0 2 0 0 10 0 53 0 8 0 2 7 0 0 6 0 3 0 83 0 0 21 0 0 0 0 0 0 0 18 0 0 0 0 0 0 0 0 0 4 2 2 24 16 0 0 0 5 0 0 0 0 Parabacteroides 35 194 35 230 19 70 69 103 101 96 89 77 70 75 35 27 30 35 14 36 79 38 73 29 32 217 67 0 82 5 44 58 92 116 23 47 115 17 0 32 35 54 191 23 100 105 19 105 111 111 39 65 28 5 Paraprevotella 0 18 0 0 0 40 211 0 0 0 0 0 0 5 0 0 0 0 5 0 0 112 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 44 0 0 0 0 0 0 3 0 0 0 0 38 0 0 Parasutterella 0 2 0 0 0 0 0 0 0 0 9 16 0 9 0 0 0 0 0 0 5 0 0 0 0 0 0 6 0 0 2 6 0 0 0 4 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 3 0 Petrimonas 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Phascolarctobacterium 74 16 34 46 6 10 12 0 0 26 2 52 3 27 4 0 26 0 0 40 0 10 0 0 14 16 12 0 22 6 28 21 0 30 20 0 0 6 2 5 18 27 0 0 23 0 9 24 0 80 0 0 10 7 Prevotella 913 0 0 0 0 1174 0 550 35 0 0 0 0 218 0 0 0 0 1101 0 0 135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 1054 0 0 0 0 794 0 0 174 0 0 0 0 56 0 1290 Pseudoflavonifractor 0 0 0 11 0 19 0 6 34 0 0 0 2 0 0 0 10 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 18 0 0 0 0 0 0 0 18 Raoultella 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Robinsoniella 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Roseburia 17 2 29 117 122 7 2 0 0 4 0 4 3 0 18 108 6 0 0 5 2 6 57 8 18 33 99 0 4 0 13 0 0 0 19 0 22 3 0 0 8 21 13 2 0 0 2 13 0 5 20 24 0 0 Ruminococcus 0 0 0 0 0 0 0 0 0 25 0 0 0 14 2 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 11 0 0 0 0 0 0 0 0 14 0 10 0 0 Ruminococcus2 0 9 6 0 2 0 0 0 2 5 4 10 9 8 0 0 0 0 0 0 31 0 25 17 2 2 9 0 5 0 0 8 10 21 0 0 0 0 6 0 0 0 0 0 0 14 0 0 0 4 10 10 2 2 Salmonella 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 Streptococcus 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Subdoligranulum 2 0 0 2 2 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 4 0 0 0 5 0 37 0 10 0 0 0 0 0 0 2 0 3 0 0 0 0 0 11 0 0 0 0 0 0 5 0 0 0 Succinatimonas 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 Succinivibrio 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0 0 0 0 0 0 0 0 Sutterella 10 0 0 0 0 3 0 0 0 0 0 0 0 0 37 0 0 0 0 0 0 3 2 0 0 2 0 0 11 0 34 0 10 2 0 0 0 0 16 0 4 0 0 5 22 0 0 3 0 0 5 3 0 4 Tindallia 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Trabulsiella 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Veillonella 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 Victivallis 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 Xylanibacter 0 0 0 0 0 0 0 5 0 0 0 0 0 10 0 0 0 0 5 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 3 0 0 0 0 0 0 0 13 0 5