Samples NASH14 NASH16 NASH18 NASH19 NASH25 NASH26 NASH27 NASH28 NASH29 NASH30 NASH31 NASH32 NASH33 NASH4 NASH43 NASH46 NASH10 NASH13 NASH23 NASH3 NASH38 NASH40 NASH41 NASH42 NASH44 NASH50 NASH51 NASH52 NASH55 NASH6 NASH60 NASH61 NASH63 NASH66 NASH67 NASH68 NASH71 NASH72 NASH73 NASH74 NASH9 NASH.CR NASH.DP NASH1 NASH11 NASH17 NASH2 NASH21 NASH22 NASH34 NASH36 NASH37 NASH39 NASH54 NASH56 NASH57 NASH58 NASH62 NASH65 NASH69 NASH7 NASH70 NASH8 Acetanaerobacterium 0 0 12 0 0 0 11 0 1 0 4 1 0 0 0 35 0 0 0 26 0 0 17 0 30 0 0 14 0 0 0 24 0 1 0 0 7 0 0 0 3 5 18 0 0 0 6 2 0 0 0 0 0 6 0 1 1 4 1 1 0 3 0 Acetivibrio 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Acidaminococcus 0 0 0 0 888 0 576 1 336 103 314 0 34 1 6 0 1 0 0 92 0 1 182 523 0 55 1 145 365 0 0 0 153 0 0 0 0 0 13 0 0 0 862 0 3 0 5 0 597 1 0 13 15 0 0 0 0 0 0 717 0 0 0 Acidovorax 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 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68 36 63 0 456 10 140 0 249 5 11 0 81 3 14 4 12 51 22 44 84 24 153 Anaerotruncus 0 0 5 2 2 0 7 0 0 1 4 0 2 0 0 0 0 0 0 0 0 0 0 1 2 0 0 10 0 0 0 0 0 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 0 6 0 2 0 2 0 0 1 0 0 1 0 0 1 Anaerovorax 3 1 1 2 0 0 0 0 2 0 7 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Arcanobacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 2 0 0 15 0 0 0 0 0 6 0 0 0 0 Arcobacter 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 Atopobium 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 2 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 Bacteroides 407 1961 1544 3374 8215 366 3268 1429 1372 3142 1139 2020 1062 20 1302 5962 269 1269 647 434 8773 10822 5310 3365 2200 174 5600 4110 7325 6 3879 2421 280 292 25 1137 630 1266 14 933 2941 3358 2077 30 1014 1309 136 4726 5352 8997 107 1303 830 3909 791 142 879 3053 1224 2405 2667 1305 3506 Barnesiella 4 8 85 0 26 0 2 28 125 0 25 210 0 0 48 107 1 0 0 2 0 0 3 68 43 4 0 0 10 0 17 2 0 0 0 0 0 14 0 2 0 0 0 0 0 3 0 0 0 1 0 13 0 0 0 0 0 7 0 3 6 0 54 Bifidobacterium 339 250 98 0 12 265 652 467 34 768 838 50 31 1 62 528 0 21 533 0 1169 12 9 21 70 225 245 182 0 0 8 102 1 550 8 0 3 556 3 198 225 34 1 0 58 3 0 0 647 65 12 0 3 0 70 3 2 169 53 331 0 0 212 Bilophila 0 10 2 1 1 5 3 4 3 5 11 1 5 0 0 3 0 0 59 4 0 32 16 2 45 2 6 23 0 0 12 1 7 0 0 0 2 4 1 0 0 6 7 2 0 6 24 0 0 35 2 10 0 6 0 0 1 24 27 17 1 0 19 Blautia 2098 899 6459 4073 410 741 3635 1464 2419 2538 2896 333 40 55 322 370 0 218 2992 981 251 1318 101 92 153 143 282 628 651 1 32 234 32 800 3 88 17 511 0 232 115 51 702 26 733 65 6627 62 962 103 105 11 168 23 74 34 55 371 56 198 683 129 586 Brachybacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Brevibacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 803 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Butyricicoccus 7 2 11 23 4 7 5 11 20 25 10 4 0 0 7 4 0 6 57 13 5 9 10 3 3 1 0 14 2 1 1 11 3 24 3 7 1 18 0 11 1 4 15 0 10 1 11 1 22 4 17 9 0 0 7 3 0 5 8 3 1 8 5 Butyricimonas 1 0 1 0 11 0 2 4 0 0 0 3 0 0 0 0 0 0 0 3 0 0 1 19 0 0 0 52 0 0 1 13 1 0 0 22 0 7 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 Campylobacter 0 0 0 0 0 0 0 2 23 0 0 0 0 64 0 1 244 1 0 32 8 15 24 29 183 1 39 99 0 426 200 1 2 0 3 35 51 37 706 6 1928 8 0 87 422 72 1 1323 131 285 329 1061 133 49 2 702 10 344 209 507 2 0 27 Cetobacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1579 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 0 0 Chryseobacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 Citrobacter 0 0 0 0 0 0 0 13 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 15 0 0 1 0 0 0 0 0 1 0 0 0 3 0 0 0 2 0 87 0 3 0 1 0 1 0 1 0 0 0 0 Cloacibacillus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 281 0 0 0 0 0 0 0 0 0 1 0 0 7 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Clostridium_III 8 1 10 3 0 0 0 0 0 24 5 0 0 0 0 0 0 0 0 3 0 5 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 Clostridium_IV 122 15 657 173 18 11 118 23 319 32 865 260 7 9 16 30 0 1 48 92 17 21 22 6 59 2 6 117 18 0 5 328 1 28 1 39 7 12 0 8 65 7 1 10 11 10 14 9 35 12 8 7 0 0 21 0 1 121 31 13 18 5 27 Clostridium_sensu_stricto 0 1 1 0 0 2 14 19 1 1 0 96 0 0 1 42 0 0 0 2 0 0 0 0 5 6 0 5 1 0 0 8 0 57 0 0 0 12 0 4 40 0 1 0 0 0 0 0 82 0 34 0 18 0 1 3 0 6 2 0 0 0 1 Clostridium_XI 9 7 30 107 10 14 115 92 24 47 31 32 0 5 8 100 0 7 31 119 10 26 0 1 35 1 4 67 0 0 4 44 0 32 5 1 10 77 0 26 24 11 2 1 13 11 11 0 104 11 13 1 578 1 9 2 0 0 1 18 36 0 14 Clostridium_XlVa 66 43 123 71 116 66 33 68 64 80 17 36 22 3 77 107 5 57 195 314 46 280 33 129 95 10 150 534 179 13 132 130 117 68 2 67 16 93 0 38 12 78 147 48 82 250 185 46 193 175 48 138 80 53 28 5 92 81 165 40 40 31 169 Clostridium_XlVb 12 16 32 0 0 0 71 0 43 7 11 10 0 2 2 3 0 1 19 2 0 15 17 3 16 3 3 34 59 0 2 17 55 14 0 51 0 4 1 2 0 3 19 0 0 1 22 37 16 19 3 17 0 11 2 0 0 31 45 0 14 11 45 Clostridium_XVIII 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Collinsella 21 24 16 0 1 6 4 4 6 30 32 0 0 0 4 31 0 11 0 1 1 10 0 3 13 2 12 0 11 0 3 32 2 18 0 2 0 20 1 0 1 0 2 0 1 0 1 1 0 8 6 0 2 2 1 1 1 5 0 12 2 0 8 Comamonas 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Coprococcus 292 105 44 247 122 63 334 0 243 92 258 96 1 2 59 66 0 15 405 205 29 105 15 41 60 29 34 20 35 1 19 77 5 204 0 14 14 130 4 45 41 18 23 3 56 13 58 3 0 57 35 24 12 22 50 6 9 70 0 24 22 19 69 Corynebacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 174 0 0 0 9 3 9 0 2 3 1 58 0 1 0 0 1 0 0 0 0 208 0 309 3 4 0 1 0 3 0 83 3 0 0 0 0 0 44 6 0 0 3 2 1 4 0 0 0 1 Desulfomicrobium 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Desulfovibrio 0 0 0 0 29 0 0 0 88 0 36 0 0 0 0 0 0 0 0 3 0 0 0 54 0 0 0 0 0 0 0 0 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96 0 0 1 0 0 0 0 42 0 0 0 0 0 Dialister 48 387 0 438 0 144 135 0 7 1 0 201 0 390 102 21 326 0 1339 14 45 113 3 84 612 0 16 13 0 479 193 184 0 168 47 145 108 15 820 3 0 27 1 599 282 490 129 386 103 331 227 467 94 235 21 145 38 314 659 67 37 1 0 Dietzia 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Dorea 61 140 208 280 70 126 335 86 356 239 361 51 7 14 32 97 2 58 718 182 48 56 29 39 149 20 59 21 62 0 7 169 33 205 1 36 1 131 1 51 40 60 68 3 78 11 284 19 251 110 64 16 53 17 23 9 24 71 22 57 58 30 167 Eggerthella 3 0 5 11 0 0 0 1 0 1 0 0 0 0 0 0 0 2 17 0 1 2 2 0 3 0 2 13 4 0 0 2 0 0 0 2 0 0 0 0 3 4 1 0 7 5 0 0 1 2 0 2 0 1 0 0 11 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82 116 49 86 15 13 1 0 167 58 91 1 26 16 18 4 7 1 22 1 67 4 47 282 2 8 0 1 Facklamia 0 0 0 0 0 0 0 0 0 0 0 0 0 1822 0 0 3 0 0 0 3 0 0 0 0 0 1 0 0 6 0 0 0 0 0 0 2 1 1 0 0 0 0 0 17 0 0 0 0 0 0 61 2 0 1 0 0 0 0 0 0 0 0 Faecalibacterium 1217 2047 1496 2033 332 547 544 966 2649 989 527 1113 185 52 973 237 15 136 1661 293 2009 378 323 311 117 134 837 563 449 2 44 458 41 2377 3 12 56 1668 4 911 99 793 42 38 691 326 187 3 3267 152 346 28 294 39 683 75 76 1325 39 815 703 121 896 Finegoldia 0 0 0 0 0 0 0 0 2 0 0 0 0 50 0 3 161 12 1 2661 29 91 15 934 1921 0 3 2 3 188 329 2 0 0 449 130 113 62 50 26 30 22 77 333 948 384 16 74 12 7 0 709 1580 0 7 111 116 0 628 2 39 5 58 Flavonifractor 5 3 9 12 2 0 34 15 4 29 5 4 9 1 0 11 1 5 34 1 5 21 13 12 16 0 10 45 11 0 1 15 12 0 0 23 4 1 0 3 0 10 4 1 1 8 0 20 9 36 0 36 1 48 0 0 0 0 5 0 2 1 9 Fusobacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 8 0 0 211 0 0 0 0 0 0 0 334 0 37 2 0 0 254 78 0 0 0 7 61 78 12 0 0 0 19 0 419 0 0 1 0 Gallicola 0 0 0 0 0 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0 0 0 0 0 0 0 0 0 0 0 0 0 0 Lachnospiracea_incertae_sedis 341 100 712 924 166 30 285 254 434 367 513 91 12 9 141 335 0 39 1062 203 58 271 43 62 84 28 66 157 100 2 14 93 12 168 3 16 5 131 1 56 25 51 100 16 215 19 351 104 70 190 27 24 356 11 93 14 19 74 159 56 100 15 117 Lactobacillus 0 0 0 5 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 37 13 0 15 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 3 0 0 0 0 0 3 0 52 0 1 13 6 2 0 0 17 0 0 0 2 0 0 2 4 Lactococcus 2 0 6 11 0 1 8 0 3 1 1 1 0 0 0 2 1 4 1 1 0 1 0 2 5 0 6 0 1 0 0 1 0 0 0 1 0 7 4 0 0 1 1 0 5 3 0 5 20 2 10 1 26 0 13 1 4 2 3 1 1 1 0 Lactonifactor 0 0 6 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Leuconostoc 0 0 0 1 0 0 5 0 2 1 2 0 0 5 0 0 1 2 1 5 1 10 1 16 16 0 5 1 3 0 2 4 0 0 1 2 0 5 11 4 3 3 2 0 16 12 0 10 71 2 15 9 42 0 7 1 7 8 1 4 0 3 0 Megamonas 0 0 0 0 0 4311 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 260 0 419 0 0 0 0 0 0 0 0 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234 17 329 11 1 42 74 20 10 0 7 0 85 0 20 27 0 21 0 1 Mycoplasma 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 Natronincola 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Negativicoccus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 64 73 0 0 0 0 1 11 0 0 0 28 2 4 2 1 0 0 9 0 9 62 22 0 2 4 1 0 27 5 7 0 4 0 0 0 0 7 0 0 Nesterenkonia 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Obesumbacterium 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Odoribacter 1 3 32 22 81 0 9 2 15 15 0 51 0 0 20 28 0 0 0 16 0 0 42 20 0 11 1 0 0 0 5 10 9 0 0 0 0 52 0 24 0 0 29 0 0 0 0 13 5 0 5 13 0 44 0 2 15 103 14 39 0 14 28 Oligella 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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