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Dashboard ID:
1a52c9c2
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Note!
Integrated Network analysis module is not available due to absence of Inter-omic data and any continous metadata.
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Note!
Node Metadata overlay option is not available due to absence of Node Metadata.
Categorical Networks
Integrated Networks
Venn Diagrams
Properties
Update
Parameters
Propagate to modules
Algorithm
NAMAP w/ Spearman
NAMAP w/ Pearson
SparCC
ReBoot (CCREPE)
CCLasso
Permuted (Resample) Spearman
Permuted (Resample) Pearson
Permuted (Reshuffle) Spearman
Permuted (Reshuffle) Pearson
Pearson (vanilla)
Spearman (vanilla)
p-value
Iterations
Corr. cutoff
critical-r
Manual
Venn Diagram
Check Task Status
Change view mode:
Choose Network Component
Nodes (Venn of Nodes)
Edges (Venn of Edges)
View Mode
Classic
Edwards
Update
Parameters
Propagate to modules
Algorithm
NAMAP w/ Spearman
NAMAP w/ Pearson
SparCC
ReBoot (CCREPE)
CCLasso
Permuted (Resample) Spearman
Permuted (Resample) Pearson
Permuted (Reshuffle) Spearman
Permuted (Reshuffle) Pearson
Pearson (vanilla)
Spearman (vanilla)
p-value
Iterations
Corr. cutoff
critical-r
Manual
Properties
Check Task Status
Switch Output Type:
View Mode
Tables
Plots
Female
Male
CD
UC
nonIBD
IBD
nonIBD
Border
Active
Remission
nonIBD
Unknown
Cedars_Sinai
Emory
Cincinnati
MGH
MGH_Pediatrics
No
Yes
Switch property:
Degree
Clustering Coeff
Betweenness
Eigen Vector
Coreness
Closeness
Eccentricity
Layout:
Classic
Notched
Violin
Bean
Beeswarm
Scatter
Trend Lines
Download
Female
Male
CD
UC
nonIBD
IBD
nonIBD
Border
Active
Remission
nonIBD
Unknown
Cedars_Sinai
Emory
Cincinnati
MGH
MGH_Pediatrics
No
Yes
Update
Parameters
Propagate to modules
Algorithm
NAMAP w/ Spearman
NAMAP w/ Pearson
SparCC
ReBoot (CCREPE)
CCLasso
Permuted (Resample) Spearman
Permuted (Resample) Pearson
Permuted (Reshuffle) Spearman
Permuted (Reshuffle) Pearson
Pearson (vanilla)
Spearman (vanilla)
p-value
Iterations
Corr. cutoff
critical-r
Manual
Network View
Correlogram
Complete
Bi-partite
Network Diagram
Check Task Status
Classical
Sankey
Image Scale:
Font Size:
Order:
Hierarchical Clustering
Alphabetic
Update
Download Plot
Correlation Matrix
Download Plot
Sized nodes by:
Degree
Betweenness
Coreness
EigenVector
FullScreen
Download Legend
Node Legend
Edge Legend
Pos. (+) correlation
Neg. (-) correlation
Global Property
Value
Nodes
Edges
Diameter
Density
Avg. Degree
Change Layout
Hier
Conc
Grid
Cose
Circ
Rand
Change Node Size
Change Font Size
Change Font Size
Downloads
Graph (PNG)
Graph (SVG)
EdgeList (TXT)
Gephi File (GDF)
Cytoscape (JSON)
Abundance Data (TXT)
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Right click and save
(Downloaded image will be a high resolution image)
Download files
Edge Lists
Property Tables
Download
Download
Download
Update
Parameters
Propagate to modules
Algorithm
NAMAP w/ Spearman
NAMAP w/ Pearson
SparCC
ReBoot (CCREPE)
CCLasso
Permuted (Resample) Spearman
Permuted (Resample) Pearson
Permuted (Reshuffle) Spearman
Permuted (Reshuffle) Pearson
Pearson (vanilla)
Spearman (vanilla)
p-value
Iterations
Corr. cutoff
critical-r
Manual
Viewing Community profile for
Communtiy table space
Filtration and Normalization
Original:
503
Features
Current:
54
Features
Downlaod Data
Data Max:
5.18693
| Prevalance:
0.05
x (max) | Occurence:
10
% population | Normalization/Transformation:
qn
Change method
Total Sum Scaling
Cumulative Sum Scaling
Quartile Normalization
Deseq2/ RLE
CLR
TMM
Prevalence:
Occurence:
Update
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